protein.summary: Summary information of selected fluorescent proteins.
In ssokolen/fluoroscripts: Scripts for Importing and Processing Spectrofluorometry Data
Description
Information was largely taken from the data provided by Talley Lambert
and Kurt Thorn under the Creative Commons Attribution 3.0 license
(nic.ucsf.edu/FPvisualization/). Less detailed information was added
from Addgene's Fluorescent Protein Guide
(https://www.addgene.org/fluorescent-proteins/plasmid-backbones/).
Small changes were made to protein names for consistency.
Usage
1
Format
A data frame with 95 rows and 14 variables summarizing common
fluorescent protein properties. See nic.ucsf.edu/FPvisualization/
for more information.
- protein
Name of protein
- peak_excitation
Wavelength (nm) of peak excitation
- peak_emission
Wavelength (nm) of peak emission
- stokes
Stokes shift (difference between emission and excitation)
- extinction
Extinction coefficient
- qy
Quantum yield
- brightness
Normalized product of extinction coefficient and
quantum yield
- agg
Aggregation state of protein
- pka
pKa of protein
- bleach
Bleaching time in seconds
- mature
Maturation time in minutes
- lifetime
Fluorescence lifetime in nanoseconds
- doi
Literature reference
- addgene
TRUE if availabel through addgene
ssokolen/fluoroscripts documentation built on May 30, 2019, 8:43 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Information was largely taken from the data provided by Talley Lambert and Kurt Thorn under the Creative Commons Attribution 3.0 license (nic.ucsf.edu/FPvisualization/). Less detailed information was added from Addgene's Fluorescent Protein Guide (https://www.addgene.org/fluorescent-proteins/plasmid-backbones/). Small changes were made to protein names for consistency.
Usage
1 |
Format
A data frame with 95 rows and 14 variables summarizing common fluorescent protein properties. See nic.ucsf.edu/FPvisualization/ for more information.
- protein
Name of protein
- peak_excitation
Wavelength (nm) of peak excitation
- peak_emission
Wavelength (nm) of peak emission
- stokes
Stokes shift (difference between emission and excitation)
- extinction
Extinction coefficient
- qy
Quantum yield
- brightness
Normalized product of extinction coefficient and quantum yield
- agg
Aggregation state of protein
- pka
pKa of protein
- bleach
Bleaching time in seconds
- mature
Maturation time in minutes
- lifetime
Fluorescence lifetime in nanoseconds
- doi
Literature reference
- addgene
TRUE if availabel through addgene
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.