API for stemangiola/sccomp
Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data
| Global functions | |
|---|---|
| .subset | Source code |
| add_attr | Source code |
| as_matrix | Source code |
| check_columns_exist | Source code |
| check_if_any_NA | Source code |
| check_if_columns_right_class | Source code |
| check_if_count_integer | Source code |
| check_if_within_posterior | Source code |
| clear_stan_model_cache | Source code |
| counts_obj | Man page |
| draws_to_tibble_x_y | Source code |
| formula_to_random_effect_formulae | Source code |
| generate_quantities_fx | Source code |
| get_mean_precision | Source code |
| get_mean_precision_association | Source code |
| get_output_samples | Man page |
| get_specific_annotation_columns | Source code |
| gt | Source code |
| ifelse_pipe | Source code |
| multipanel_theme | Man page |
| not | Source code |
| parse_formula | Source code |
| parse_formula_random_effect | Source code |
| pathfinder_fx | Source code |
| plot.sccomp_tbl | Man page Source code |
| plot_1D_intervals | Man page |
| plot_2D_intervals | Man page |
| plot_boxplot | Man page |
| plot_scatterplot | Man page |
| plot_summary | Source code |
| sample_fx | Source code |
| sample_safe | Source code |
| sccomp_boxplot | Man page Source code |
| sccomp_calculate_residuals | Man page Source code |
| sccomp_calculate_residuals.sccomp_tbl | Source code |
| sccomp_estimate | Man page Source code |
| sccomp_estimate.DFrame | Source code |
| sccomp_estimate.Seurat | Source code |
| sccomp_estimate.SingleCellExperiment | Source code |
| sccomp_estimate.data.frame | Source code |
| sccomp_glm | Source code |
| sccomp_glm.DFrame | Source code |
| sccomp_glm.Seurat | Source code |
| sccomp_glm.SingleCellExperiment | Source code |
| sccomp_glm.data.frame | Source code |
| sccomp_glm_data_frame_counts | Source code |
| sccomp_glm_data_frame_raw | Source code |
| sccomp_predict | Man page Source code |
| sccomp_predict.sccomp_tbl | Source code |
| sccomp_proportional_fold_change | Man page Source code |
| sccomp_proportional_fold_change.sccomp_tbl | Source code |
| sccomp_remove_outliers | Man page Source code |
| sccomp_remove_outliers.sccomp_tbl | Source code |
| sccomp_remove_unwanted_variation | Man page Source code |
| sccomp_remove_unwanted_variation.sccomp_tbl | Source code |
| sccomp_replicate | Man page Source code |
| sccomp_replicate.sccomp_tbl | Source code |
| sccomp_test | Man page Source code |
| sccomp_test.sccomp_tbl | Source code |
| sce_obj | Man page |
| seurat_obj | Man page |
| simulate_data | Man page Source code |
| simulate_data.tbl | Source code |
| st | Source code |
| summary_to_tibble | Source code |
| test_contrasts | Source code |
| variational_fx | Source code |
| vb_iterative | Source code |
