setReTrm.factAnal: Random effects term for factor analysis

Description Usage Arguments Mixed model formula usage Parameters See Also

Description

Random effects term for factor analysis

Usage

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## S3 method for class 'factAnal'
setReTrm(object, addArgsList, auxEnv = NULL,
  devfunEnv = NULL)

## S3 method for class 'factAnal'
scores(x, ...)

## S3 method for class 'factAnal'
biplot(x, ...)

Arguments

x

setReTrm.factAnal object

...

not used (for consistency with generic in vegan package)

object

a reTrmStruct object

addArgsList

a list of named quantities within which addArgsExpr is evaluated

auxEnv

an optional auxilliary environment containing objects that are possibly required for the setting of a random effects term structure (currently this is almost always the environment of a call to strucParseFormula, unless setReTrm is called directly)

devfunEnv

optional environment of the deviance function

Mixed model formula usage

factAnal(0 + obsFac | varFac, nAxes, seed)

obsFac:

grouping factor for multivariate observations

varFac:

grouping factor for variables

nAxes:

number of axes

seed:

random seed for initial axis values

Parameters

Covariance:

none

Loadings:

elements of the lower triangle of the variables by axes loadings matrix

See Also

Other setReTrm: cooccur, setReTrm.cooccur; expDecay, setReTrm.expDecay; findReTrmClasses, getAddArgs, ranef.reTrmStruct, setReTrm, setReTrm.default; flexvar, setReTrm.flexvar; getCorStruct, nlmeCorStruct, setReTrm.nlmeCorStruct; identity, setReTrm.identity; lme4, setReTrm.lme4; obslev, setReTrm.obslev; phyloEdge, setReTrm.phyloEdge; sem, setReTrm.sem; setReTrm.varExp, varExp; setReTrm.varIdent, varIdent


stevencarlislewalker/lme4ord documentation built on May 30, 2019, 4:43 p.m.