Files in stevencarlislewalker/lme4ord
Generalized Linear Mixed Models with Flexible (Co)Variance Structures

.Rbuildignore
DESCRIPTION
NAMESPACE
R/devianceFunctionConstruction.R R/formulaParsing.R R/laplace.R R/lme4ord.R R/nodeModel.R R/optimization.R R/outputAndInference.R R/randomEffectsStructures.R R/structuredGLMM.R R/structuredSparseMatrices.R R/utilities.R R/zzz.R README.md
inst/README/Makefile
inst/README/README.R inst/README/README.Rmd
inst/README/figure/plot Zt-1.png
inst/README/figure/plot full cov-1.png
inst/README/figure/plot lambda-1.png
inst/README/figure/plot lambda-2.png
inst/README/figure/plot phylogeny-1.png
inst/README/figure/plot phylogeny-2.png
inst/README/figure/plot sim data-1.png
inst/README/figure/unnamed-chunk-1-1.png
inst/README/figure/unnamed-chunk-1-2.png
inst/README/figure/unnamed-chunk-4-1.png
inst/README/figure/unnamed-chunk-5-1.png
inst/README/figure/unnamed-chunk-6-1.png
inst/README/futureREADME.R inst/README/oldREADME.Rmd
inst/extraData/loon.csv
inst/githubIssues/confInt/Makefile
inst/githubIssues/confInt/confInt.Rmd inst/githubIssues/confInt/confInt.md
inst/githubIssues/confInt/figure/unnamed-chunk-4-1.png
inst/misc/customKronecker.R inst/misc/edgeModel/edgeModel.R inst/misc/fish.R inst/misc/gblmer.R
inst/misc/generalDevfuns/Makefile
inst/misc/generalDevfuns/generalDevfuns.R
inst/misc/generalDevfuns/generalDevfuns.Rnw
inst/misc/generalDevfuns/generalDevfuns.pdf
inst/misc/generalDevfuns/generalDevfuns.tex
inst/misc/glmerf.R inst/misc/matchingWithTony.R inst/misc/mkGeneralGlmerDevfun.R inst/misc/mkPenaltyFunction.R
inst/misc/modelDescription/Makefile
inst/misc/modelDescription/modelDescription.pdf
inst/misc/modelDescription/modelDescription.tex
inst/misc/modelSpecificationTools.R
inst/misc/notesOnGlmerDevfuns/Makefile
inst/misc/notesOnGlmerDevfuns/notesOnGlmerDevfuns.Rmd inst/misc/notesOnGlmerDevfuns/notesOnGlmerDevfuns.md inst/misc/old.R
inst/misc/pglmer.R
inst/misc/pglmm.R
inst/modelTypes/expDecay/expDecay.Rnw
inst/modelTypes/expDecay/expDecay.pdf
inst/modelTypes/factAnal/factAnal.Rnw
inst/modelTypes/factAnal/factAnal.pdf inst/skeletons/setReTrm.R inst/testdata/mkSimDat.R man-roxygen/setReTrm.R man/Ops.strucMatrix.Rd man/as.strucMatrix.Rd man/assignWith.Rd man/bind.Rd man/changeSparseFormat.Rd man/chol.Rd man/compressStrucGlmer.Rd man/count.Rd man/covExpDecay.Rd man/denseInds.Rd man/edgeTipIndicator.Rd man/factors.Rd man/family.strucGlmer.Rd man/familySimFun.Rd
man/figures/modularizationDiagram.png
man/flattenIntVec.Rd man/getInit.Rd man/getModMatAndGrpFac.Rd man/getReTrm.Rd man/getRepPattern.Rd man/kron.Rd man/langOps.Rd man/laplace.Rd man/listOfSubscriptingCallsWithListOfIndices.Rd man/listTranspose.Rd man/lme4ord.Rd man/mkGeneralGlmerDevfun.Rd man/mkParInds.Rd man/mkPenaltyFun.Rd man/mkReTrmStructs.Rd man/mkSparseTrans.Rd man/mkTrans.Rd man/nChoose2Inv.Rd man/orthProcrustesRotMat.Rd man/packReTrm.Rd man/parLength.Rd man/pars.Rd man/printReTrm.Rd man/rStrucMatrix.Rd man/resetTransConst.Rd man/scalarMult.Rd man/setLowerUpperDefault.Rd man/setReTrm.Rd man/setReTrm.cooccur.Rd man/setReTrm.expDecay.Rd man/setReTrm.factAnal.Rd man/setReTrm.flexvar.Rd man/setReTrm.identity.Rd man/setReTrm.lme4.Rd man/setReTrm.nlmeCorStruct.Rd man/setReTrm.obslev.Rd man/setReTrm.phyloEdge.Rd man/setReTrm.sem.Rd man/setReTrm.varExp.Rd man/setReTrm.varIdent.Rd man/showSkeleton.Rd man/simAddArgs.Rd man/simReTrm.Rd man/simStrucParsedForm.Rd man/simplifyFacList.Rd man/simplifyStrucMatrix.Rd man/sort.strucMatrix.Rd man/sortedBind.Rd man/splitForm.Rd man/stanCov.Rd man/strucGlmer-class.Rd man/strucGlmer.Rd man/strucMatrix-class.Rd man/strucMatrix.Rd man/strucMatrixBlank.Rd man/strucMatrixCol.Rd man/strucMatrixCompSymm.Rd man/strucMatrixConstVarChol.Rd man/strucMatrixCorFactor.Rd man/strucMatrixCorMatChol.Rd man/strucMatrixDiag.Rd man/strucMatrixExpChol.Rd man/strucMatrixFull.Rd man/strucMatrixGenFullTri.Rd man/strucMatrixIdent.Rd man/strucMatrixInd.Rd man/strucMatrixOneOffDiag.Rd man/strucMatrixOnes.Rd man/strucMatrixSymm.Rd man/strucMatrixTri.Rd man/strucMatrixVarWithCovariate.Rd man/strucMkDevfun.Rd man/strucOpt.Rd man/strucParseFormula.Rd man/subset.Rd man/tipNodeRelationship.Rd man/triInds.Rd man/update.reTrmStruct.Rd tests/factAnal.R tests/familySimFun.R tests/gaussianFamily.R tests/generalGlmer.R tests/loon.R tests/nChoose2Inv.R tests/nlmeCorStructCorBrownian.R tests/nlmeCorStructExpVar.R tests/phyloEdge.R tests/splitForm.R tests/strucMatrix.R tests/update.R
stevencarlislewalker/lme4ord documentation built on May 26, 2017, 7:58 p.m.