Generalized Linear Mixed Models with Flexible (Co)Variance Structures

assignWith | Assign to an environment the value of an expression evaluated... |

as.strucMatrix | Coerce to and from structured sparse matrices |

bind | Row, column, and block-diagonal binding for structured sparse... |

changeSparseFormat | Changing sparse format |

chol | Cholesky decomposition of structured sparse matrices |

compressStrucGlmer | Compress strucGlmer object |

count | Count unique values |

covExpDecay | Exponentially decaying covariances |

denseInds | Indices for square dense matrices |

edgeTipIndicator | Relationships between tips and edges |

factors | Extract factors |

familySimFun | Family simulation functions |

family.strucGlmer | Extract family object |

flattenIntVec | Flatten an integer vector |

getInit | Get and set initial parameter values for structured sparse... |

getModMatAndGrpFac | Get model matrix and grouping factor |

getRepPattern | Get repetition pattern of a structured sparse matrix |

getReTrm | Get random effects structures from a strucGlmer object |

kron | Kronecker and Khatri-Rao products for structured sparse... |

langOps | Tools for constructing formula terms |

laplace | Laplace approximation |

listOfSubscriptingCallsWithListOfIndices | List of subscripting calls with a list of indices |

listTranspose | Transpose a list |

lme4ord | 'lme4ord': Generalized Linear Mixed Models with Flexible... |

mkGeneralGlmerDevfun | Make a general (Laplace) glmer deviance function |

mkParInds | Make parameter indices |

mkPenaltyFun | Make penalty function |

mkReTrmStructs | Construct random effects structures |

mkSparseTrans | Make transformation function to be used with a... |

mkTrans | Construct functions for transforming a parameter vector to... |

nChoose2Inv | Inverse of the n-choose-2 function |

Ops.strucMatrix | Structured sparse matrix multiplication (and other binary... |

orthProcrustesRotMat | Orthogonal procrustean rotation matrix |

packReTrm | Package up a random effects term structure |

parLength | Lengths of parameter vectors |

pars | Parameter retrieval for structured generalized linear mixed... |

printReTrm | Print random effects term |

resetTransConst | Constant structured sparse matrix |

rStrucMatrix | Random structured sparse matrices |

scalarMult | Add scalar multiple to a structured sparse matrix |

setLowerUpperDefault | Get defaults choices for lower and/or upper bound of a model... |

setReTrm | Set model matrix slice and relative covariance factor block... |

setReTrm.cooccur | Random effects term for cooccurence model (experimental) |

setReTrm.expDecay | Random effects term with exponential decay in distance-based... |

setReTrm.factAnal | Random effects term for factor analysis |

setReTrm.flexvar | Random effects term for a flexible variance function |

setReTrm.identity | Random effects term for covariance proportional to identity... |

setReTrm.lme4 | lme4 emulator |

setReTrm.nlmeCorStruct | Random effects term from an 'nlme'-style 'corStruct' object |

setReTrm.obslev | Random effects term with observation level random effects |

setReTrm.phyloEdge | Random effects term for edge-based model of tree-induced... |

setReTrm.sem | Random effects term for structural equation model |

setReTrm.varExp | Random effects term with exponential variance structure |

setReTrm.varIdent | Random effects term with constant variance within groups |

showSkeleton | Show skeleton for some type of function |

simAddArgs | Simulate additional arguments (experimental) |

simplifyFacList | Simplify factor list over random effects terms (not currently... |

simplifyStrucMatrix | Simplify structured sparse matrices |

simReTrm | Simulate from a random effects term |

simStrucParsedForm | Simulate from a parsed formula |

sortedBind | Bind repeated sparse matrices and sort their indices to be... |

sort.strucMatrix | Sort the indices of a structured sparse matrix |

splitForm | Split a formula |

stanCov | Standardize covariance matrix to determinant one |

strucGlmer | Generalized linear mixed model with structured (co)variance... |

strucGlmer-class | Structured GLMM class |

strucMatrix | Structured sparse matrices |

strucMatrixBlank | Blank structured sparse matrix |

strucMatrix-class | A structured sparse matrix class |

strucMatrixCol | Column vector as structured sparse matrix |

strucMatrixCompSymm | Structured sparse matrix with compound symmetry |

strucMatrixConstVarChol | Structured sparse Cholesky factor leading to constant... |

strucMatrixCorFactor | Construct a structured sparse upper Cholesky factor from an... |

strucMatrixCorMatChol | Structured sparse Cholesky factor of a correlation matrix |

strucMatrixDiag | Diagonal structured sparse matrix |

strucMatrixExpChol | Cholesky factor of a structured sparse covariance matrix... |

strucMatrixFull | Full structured sparse matrix |

strucMatrixGenFullTri | General and full triangular structured sparse matrix |

strucMatrixIdent | Identity structured sparse matrix |

strucMatrixInd | Structured sparse indicator matrix |

strucMatrixOneOffDiag | Structured sparse matrix with only one non-zero value off the... |

strucMatrixOnes | Structured sparse matrix of ones |

strucMatrixSymm | Symmetric structured sparse matrix |

strucMatrixTri | Triangular structured sparse matrix |

strucMatrixVarWithCovariate | Structured sparse diagonal covariance matrix with a covariate... |

strucMkDevfun | Make a (Laplace) glmer deviance function from a parsed... |

strucOpt | Optimize a structured GLMM deviance function |

strucParseFormula | Parse a mixed model formula |

subset | Subsetting structured sparse matices |

tipNodeRelationship | Tip-node bigraph adjacency matrix |

triInds | Convert row and column indices to vector indices, for a... |

update.reTrmStruct | Update a random effects term structure with new parameters |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.