readTotals: Get the read totals
In steveped/ngsReports: Load FastqQC reports and other NGS related files

readTotals

R Documentation

Get the read totals

Description

Get the read totals from one or more FASTQC reports

Usage

readTotals(x)

Arguments

`x`	Can be a `FastqcData`, `FastqcDataList`, `FastpData`, `FastpDataList` or file paths

Value

A tibble with the columns Filename and Total_Sequences

Examples


# Get the files included with the package
packageDir <- system.file("extdata", package = "ngsReports")
fl <- list.files(packageDir, pattern = "fastqc.zip", full.names = TRUE)

# Load the FASTQC data as a FastqcDataList object
fdl <- FastqcDataList(fl)

# Print the read totals
readTotals(fdl)

steveped/ngsReports documentation built on July 24, 2024, 10:45 a.m.