data-raw/production_scripts/PCAWG_remove_rows_no_bed.R
In steverozen/DBSverify: Analyze Next Generation Sequencing Data to Verify Somatic Double-BaseSubstituion (DBS) Calls
beds <- dir("~/mvv/PCAWG_all_Collaboratory_VCFs_and_BEDs/", pattern = "\\.bed$")
tt <- data.table::fread("~/DBSverify/data-raw/collaboratory_bams_2021_07_13.csv")
bbb <- gsub("_merged_PCAWG_DBS.bed", "", beds)
bb <- tibble::tibble(aliquot_id = bbb)
xx <- dplyr::left_join(bb, tt)
data.table::fwrite(xx, file = "~/DBSverify/data-raw/collaboratory_bams_2021_07_16.csv")
steverozen/DBSverify documentation built on Dec. 23, 2021, 5:34 a.m.
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beds <- dir("~/mvv/PCAWG_all_Collaboratory_VCFs_and_BEDs/", pattern = "\\.bed$")
tt <- data.table::fread("~/DBSverify/data-raw/collaboratory_bams_2021_07_13.csv")
bbb <- gsub("_merged_PCAWG_DBS.bed", "", beds)
bb <- tibble::tibble(aliquot_id = bbb)
xx <- dplyr::left_join(bb, tt)
data.table::fwrite(xx, file = "~/DBSverify/data-raw/collaboratory_bams_2021_07_16.csv")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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