Man pages for steverozen/PCAWG7
Repository of Data from paper 'The repertoire of Mutational Signatures in Human Cancer'
| CancerTypes | Return a character vector of some common cancer types |
| exposure | PCAWG7 SigProfiler signature assignments (numbers of... |
| exposure.stats | Exposure statistics from the PCAWG7 paper |
| ExposureStats1TumorType | Gather exposure statistics for one tumor type |
| map_aliquot_ID_to_SP_ID | Translate aliquot IDs (e.g.... |
| map_SP_ID_to_tumor_type | Given PCAWG "SP" IDs (e.g. SP123958) return either the "full"... |
| PCAWG7 | PCAWG7: A package of data from paper 'Repertoire of... |
| PCAWG.sample.id | Vectors of the PCAWG 'tumor_wgs_icgc_specimen_id's |
| PCAWG.sample.sheet | PCAWG sample sheet which contains various sample information |
| SampleIDToCancerType | Split out the cancer type from the sample ID for PCAWG IDs |
| spectra | PCAWG7 mutational spectra (catalogs) |
| SplitMatrixBySampleType | Split an exposure matrix or spectrum matrix into a list of... |
| SplitPCAWGMatrixByTumorType | Extract tumor type from column names and return the input... |
| TCGA_ID_to_ICGC_ID | Translate TCGA (The Cancer Genome Atlas) IDs to ICGC... |
