spectra: PCAWG7 mutational spectra (catalogs)
In steverozen/PCAWG7: Repository of Data from paper 'The repertoire of Mutational Signatures in Human Cancer'
Description
Usage
Format
Source
Examples
Description
PCAWG7 mutational spectra (catalogs)
Usage
1
Format
A list with the elements:
- SBS96
Deprecated.
- DBS78
Deprecated.
- PCAWG
A list with the elements:
- SBS96
Strand-agnostic single-base substitutions
in trinucleotide context.
- SBS192
Single-base substitutions in transcripts
based on the sense strand.
- SBS1536
Strand-agnostic single-base substitutions
in pentanucleotide context.
- DBS78
Strand-agnostic doublet-base substitutions.
- ID
Strand-agnostic indels.
- TCGA
A list with the same elements as the
PCAWG element.
- other.genome
A list with the same elements as the
PCAWG element but with ID omitted.
- other.exome
A list with the same elements as the
PCAWG element but with ID omitted.
Source
Files below https://www.synapse.org/#!Synapse:syn11801889,
2019 Oct 09. Populated by
data-raw/spectra/load.package.variable.specra.R.
Examples
1
SBS96.spectra <- spectra$PCAWG$SBS96
steverozen/PCAWG7 documentation built on Feb. 2, 2022, 5:40 a.m.
R Package Documentation
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Description Usage Format Source Examples
Description
PCAWG7 mutational spectra (catalogs)
Usage
1 |
Format
A list with the elements:
- SBS96
Deprecated.
- DBS78
Deprecated.
- PCAWG
A list with the elements:
- SBS96
Strand-agnostic single-base substitutions in trinucleotide context.
- SBS192
Single-base substitutions in transcripts based on the sense strand.
- SBS1536
Strand-agnostic single-base substitutions in pentanucleotide context.
- DBS78
Strand-agnostic doublet-base substitutions.
- ID
Strand-agnostic indels.
- TCGA
A list with the same elements as the
PCAWGelement.- other.genome
A list with the same elements as the
PCAWGelement but withIDomitted.- other.exome
A list with the same elements as the
PCAWGelement but withIDomitted.
Source
Files below https://www.synapse.org/#!Synapse:syn11801889,
2019 Oct 09. Populated by
data-raw/spectra/load.package.variable.specra.R.
Examples
1 | SBS96.spectra <- spectra$PCAWG$SBS96
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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