exposure.stats: Exposure statistics from the PCAWG7 paper
In steverozen/PCAWG7: Repository of Data from paper 'The repertoire of Mutational Signatures in Human Cancer'
Description
Usage
Format
Source
Examples
Description
Exposure statistics from the PCAWG7 paper
Usage
1
Format
A list with one element, PCAWG, which has the sub-elements SBS96, DBS78,
ID with statistics for the corresponding mutation types by cancer type.
I.e. each element has a sub-element for each cancer type, and this element is a data.frame
with one row for each signature and
columns mean.of.those.present (the mean number of mutations for those tumors that
have the mutation) and proportion.present (the proportion of tumors in which the
signature is present).
Source
Computed from other package variables using GatherPCAWG7ExposureStatsSBS96.
Examples
1
exposure.stats$PCAWG$SBS96$`Biliary-AdenoCA`[1:3, ]
steverozen/PCAWG7 documentation built on Feb. 2, 2022, 5:40 a.m.
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Description Usage Format Source Examples
Description
Exposure statistics from the PCAWG7 paper
Usage
1 |
Format
A list with one element, PCAWG, which has the sub-elements SBS96, DBS78,
ID with statistics for the corresponding mutation types by cancer type.
I.e. each element has a sub-element for each cancer type, and this element is a data.frame
with one row for each signature and
columns mean.of.those.present (the mean number of mutations for those tumors that
have the mutation) and proportion.present (the proportion of tumors in which the
signature is present).
Source
Computed from other package variables using GatherPCAWG7ExposureStatsSBS96.
Examples
1 | exposure.stats$PCAWG$SBS96$`Biliary-AdenoCA`[1:3, ]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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