PCAWG7: PCAWG7: A package of data from paper 'Repertoire of...
In steverozen/PCAWG7: Repository of Data from paper 'The repertoire of Mutational Signatures in Human Cancer'
Description
This is a data package with 2 main package variables:
exposure and spectra.
Details
There are also PDF plots of the signatures in data-raw/plots/.
There are also several functions for handling PCAWG identifiers:
* map_SP_ID_to_tumor_type
* map_aliquot_ID_to_SP_ID
* SampleIDToCancerType
* SplitPCAWGMatrixByTumorType
* SplitMatrixBySampleType
The reference for the data is
Alexandrov, L.B., Kim, J., Haradhvala, N.J. et al.
The repertoire of mutational signatures in human cancer.
Nature 578, 94-101 (2020). doi: 10.1038/s41586-020-1943-3.
steverozen/PCAWG7 documentation built on Feb. 2, 2022, 5:40 a.m.
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Description
This is a data package with 2 main package variables:
exposure and spectra.
Details
There are also PDF plots of the signatures in data-raw/plots/.
There are also several functions for handling PCAWG identifiers:
* map_SP_ID_to_tumor_type
* map_aliquot_ID_to_SP_ID
* SampleIDToCancerType
* SplitPCAWGMatrixByTumorType
* SplitMatrixBySampleType
The reference for the data is
Alexandrov, L.B., Kim, J., Haradhvala, N.J. et al. The repertoire of mutational signatures in human cancer. Nature 578, 94-101 (2020). doi: 10.1038/s41586-020-1943-3.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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