PCAWG.sample.id: Vectors of the PCAWG 'tumor_wgs_icgc_specimen_id's
In steverozen/PCAWG7: Repository of Data from paper 'The repertoire of Mutational Signatures in Human Cancer'
Description
Usage
Format
Source
Examples
Description
Note that the PCAWG7 spectra catalogs have 2
sample ids that were blacklisted after the mutational
signature analysis was
underway. The blacklisted samples are SP116419
and SP116883, which are in PCAWG.sample.id$black.
Usage
1
Format
A list with the elements:
- white
Whitelisted IDs
- grey
Greylisted IDs
- black
Blacklisted IDs
Source
https://dcc.icgc.org/api/v1/download?fn=/PCAWG/data_releases/latest/release_may2016.v1.4.with_consensus_calls.tsv,
2019 Oct 09
Examples
1
PCAWG.white.ids <- PCAWG.sample.id$white
steverozen/PCAWG7 documentation built on Feb. 2, 2022, 5:40 a.m.
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Description Usage Format Source Examples
Description
Note that the PCAWG7 spectra catalogs have 2
sample ids that were blacklisted after the mutational
signature analysis was
underway. The blacklisted samples are SP116419
and SP116883, which are in PCAWG.sample.id$black.
Usage
1 |
Format
A list with the elements:
- white
Whitelisted IDs
- grey
Greylisted IDs
- black
Blacklisted IDs
Source
https://dcc.icgc.org/api/v1/download?fn=/PCAWG/data_releases/latest/release_may2016.v1.4.with_consensus_calls.tsv, 2019 Oct 09
Examples
1 | PCAWG.white.ids <- PCAWG.sample.id$white
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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