API for steverozen/SynSigGen
Create Catalogs of Synthetic Mutational Spectra
| Global functions | |
|---|---|
| AddAllScripts | Man page Source code |
| AddNoise | Man page Source code |
| AddScript | Man page Source code |
| AssignPresentAbsentOneSample | Man page Source code |
| BladderSkin1000 | Man page Source code |
| Create.2.7a.7b.Abstract | Man page Source code |
| Create.3.5.40.Abstract | Man page Source code |
| Create1CatRandomExpKnownSigs | Source code |
| Create1CatRandomExpRandomSigs | Man page Source code |
| CreateAndWriteCatalog | Man page Source code |
| CreateFromReal | Man page Source code |
| CreateMeanAndStdevForSigs | Man page Source code |
| CreateMixedTumorTypeSyntheticData | Man page Source code |
| CreateNumSigsPerTumor | Man page Source code |
| CreateOnePairOfRandomCatalogs | Man page Source code |
| CreateOneRandomMutSigProfile | Man page Source code |
| CreateRandomExposures | Man page Source code |
| CreateRandomMutSigProfiles | Man page Source code |
| CreateRandomSAAndSPSynCatalogs | Man page Source code |
| CreateRandomSyn | Man page Source code |
| CreateSBS1SBS5CorrelatedSyntheticData | Man page Source code |
| CreateSBS1SBS5CorrelatedSyntheticDataOneDataset | Man page Source code |
| CreateSynCatalogs | Man page Source code |
| Defunct.How.We.Mapped.From.SP.to.SA.Sig | Source code |
| Diff4SynDataSets | Man page Source code |
| ExposureNums2Exposures | Man page Source code |
| GenSBS1SBS5Exposure | Man page Source code |
| GenSBS1SBS5ExposureOneTumor | Man page Source code |
| Generate.random.exp.SA.sigs | Source code |
| Generate.random.exp.SP.sigs | Source code |
| GenerateAllRandomSA | Man page Source code |
| GenerateAllRandomSP | Man page Source code |
| GenerateAndCombineSyntheticTumors | Source code |
| GenerateListOfSigParams | Man page Source code |
| GenerateMatrixRandomExpKnownSigs200 | Source code |
| GenerateNoisyTumors | Man page Source code |
| GenerateRandomExpRandomSigs200 | Source code |
| GenerateSynAbstract | Man page Source code |
| GenerateSynExposureOneSample | Man page Source code |
| GenerateSynFromReal | Man page Source code |
| GenerateSyntheticExposures | Man page Source code |
| GenerateSyntheticTumors | Man page Source code |
| GenerateSyntheticTumorsFromSigParams | Man page Source code |
| GetExpForOneCancerType | Source code |
| GetMutationType | Source code |
| GetSynSigParamsFromExposures | Man page Source code |
| GetSynSigParamsFromExposuresOld | Source code |
| ManyTypes2700 | Man page Source code |
| MapSPToSASignatureNamesInExposure | Man page Source code |
| MeanAndSD1Sig | Source code |
| Merge2Exposures | Man page Source code |
| MergeExposures | Man page Source code |
| MergeExposuresByCancerTypes | Source code |
| MustCreateDir | Source code |
| MutationalSignatures | Man page |
| NewCreateAndWriteCatalog | Man page Source code |
| NewDiff4SynDataSets | Man page Source code |
| NumFromId | Source code |
| OLD.SplitCatCOMPOSITE | Man page Source code |
| OutDir | Man page Source code |
| PancAdenoCA1000 | Man page Source code |
| ParametersSALike | Man page Source code |
| ParametersSPLike | Man page Source code |
| PerSigMeanAndSDSA | Source code |
| PerSigMeanAndSDSP | Source code |
| PlotCorrelationScatterplot | Man page Source code |
| PlotCorrelationScatterplotForExposures | Man page Source code |
| RCCOvary1000 | Man page Source code |
| RNGMessages | Source code |
| ReadCatCOMPOSITE | Man page Source code |
| ReadExposure | Man page Source code |
| ReadSynapseExposure | Man page Source code |
| RealExposures | Man page |
| Resummarize | Source code |
| SAAndSPSynDataOneCAType | Man page Source code |
| SBS1SBS5datasetNames | Man page |
| SBS1SBS5parameter | Man page |
| SortSigId | Source code |
| SynSigGen | Man page |
| SynSigParamsOneSignature | Man page Source code |
| WriteCatCOMPOSITE | Man page Source code |
| WriteExposure | Man page Source code |
| WriteSynSigParams | Man page Source code |
| bladder.skin.for.ludmil.2019.08.18 | Source code |
| create.1000.random.2019.08.30 | Source code |
| for.ludmil.2019.08.17 | Source code |
| panc.for.ludmil.2019.08.17 | Source code |
| present.sigs | Man page Source code |
| sa.96.sigs | Man page |
| sa.COMPOSITE.sigs | Man page |
| sa.DBS.sigs | Man page |
| sa.ID.sigs | Man page |
| sa.all.real.exposures | Man page |
| sa.no.hyper.real.exposures | Man page |
| signature.params | Man page |
| sp.all.real.exposures | Man page |
| sp.no.hyper.real.exposures | Man page |
| sp.sigs | Man page |
| three.5.40.abstract.for.ludmil.2019.08.18 | Source code |
| three.5.40.for.ludmil.2019.08.17 | Source code |
| two.7a.7b.abstract.for.ludmil.2019.08.18 | Source code |
| xFixSASigNames | Man page Source code |
