RealExposures: Real exposure (signature attributions) from SignatureAnalyzer...
In steverozen/SynSigGen: Create Catalogs of Synthetic Mutational Spectra
RealExposures R Documentation
Real exposure (signature attributions) from SignatureAnalyzer and SigProfiler
Description
Real exposure (signature attributions) from SignatureAnalyzer and SigProfiler
Usage
sa.all.real.exposures
sp.all.real.exposures
sa.no.hyper.real.exposures
sp.no.hyper.real.exposures
Format
Numerical matrix with rows indicating signatures and columns indicating
(tumor) samples.
An object of class matrix (inherits from array) with 60 rows and 2780 columns.
An object of class matrix (inherits from array) with 65 rows and 2780 columns.
An object of class matrix (inherits from array) with 35 rows and 2624 columns.
An object of class matrix (inherits from array) with 65 rows and 2624 columns.
Note
Prefix sa indicates SignatureAnalyzers, sp indicates
SigProfiler; all indicates all samples, no.hyper means
that hypermutated tumors as defined for SignatureAnalyzer have been removed.
Source
https://dx.doi.org/10.7303/syn11761237.4
https://dx.doi.org/10.7303/syn11738669.5
steverozen/SynSigGen documentation built on April 1, 2022, 8:54 p.m.
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| RealExposures | R Documentation |
Real exposure (signature attributions) from SignatureAnalyzer and SigProfiler
Description
Real exposure (signature attributions) from SignatureAnalyzer and SigProfiler
Usage
sa.all.real.exposures sp.all.real.exposures sa.no.hyper.real.exposures sp.no.hyper.real.exposures
Format
Numerical matrix with rows indicating signatures and columns indicating (tumor) samples.
An object of class matrix (inherits from array) with 60 rows and 2780 columns.
An object of class matrix (inherits from array) with 65 rows and 2780 columns.
An object of class matrix (inherits from array) with 35 rows and 2624 columns.
An object of class matrix (inherits from array) with 65 rows and 2624 columns.
Note
Prefix sa indicates SignatureAnalyzers, sp indicates
SigProfiler; all indicates all samples, no.hyper means
that hypermutated tumors as defined for SignatureAnalyzer have been removed.
Source
https://dx.doi.org/10.7303/syn11761237.4
https://dx.doi.org/10.7303/syn11738669.5
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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