Assign.Cell.Type: Assign.Cell.Type
In steveyu323/SEURATEXT:
Description
Usage
Arguments
Value
View source: R/celltype_assign.R
Description
The function takes top 10 (if more than) of the exp.markers to decide the top three cell type a cluster
could belong to. use the logFC fold as the weight for the matrix, and output the cell type and corresponding marker
Usage
1
Assign.Cell.Type(ref.markers, exp.markers)
Arguments
ref.markers
Markers | Cell Type dataframe from outside reference
exp.markers
each sample's cluster has a set of overlapped markers with ref.markers
Value
A data frame with sample|cluster|type1|marker1|type2|marker2|type3|marker3
steveyu323/SEURATEXT documentation built on Nov. 5, 2019, 9:38 a.m.
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Description Usage Arguments Value
View source: R/celltype_assign.R
Description
The function takes top 10 (if more than) of the exp.markers to decide the top three cell type a cluster could belong to. use the logFC fold as the weight for the matrix, and output the cell type and corresponding marker
Usage
1 | Assign.Cell.Type(ref.markers, exp.markers)
|
Arguments
ref.markers |
Markers | Cell Type dataframe from outside reference |
exp.markers |
each sample's cluster has a set of overlapped markers with ref.markers |
Value
A data frame with sample|cluster|type1|marker1|type2|marker2|type3|marker3
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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