Shine.Out: Shine.Out

Description Usage Arguments Value

View source: R/DE_analysis.R

Description

A function to output a seurat.out object for ShinyApp visualization

Usage

1
Shine.Out(ob, diff, markers.each, markers.conserved, multiple = F)

Arguments

ob

the seurat object

diff

the differentially expressed genes of each cluster

markers.each

the markers for each condition per cluster

markers.conserved

the marker for conserved across conditions per cluster

multiple

a logical boolean on with there are more than 2 conditions, default to FALSE. If FALSE, the condition must be indicated as "CTRL" and "STIM"

Value

A seurat out object that can be used for input into app.R for ShinyApp visualization


steveyu323/SEURATEXT documentation built on Nov. 5, 2019, 9:38 a.m.