Find.Markers.Each: Find.Markers.Each

In steveyu323/SEURATEXT:

Description

A wrapper function to output: For each condition in the "stim" field, each cluster's marker that are significantly overexpressed in a given cluster compared to the rest of the clusters

Usage

Find.Markers.Each(seurat.ob, min.pct = 0.1, logfc.threshold = 0.3,
  multi = NA)

Arguments

seurat.ob	The seurat object with clustering information
min.pct	as in Seurat::FindAllMarkers function
logfc.threshold	the minimum log fold change threshold to detect differentially expressed change
multi	if "stim" field is not "CTRL" VS "STIM", then the multi field would take in a vector with the name of the stim conditions

Value

a object for each stim condition, stored in a ret object list

steveyu323/SEURATEXT documentation built on Nov. 5, 2019, 9:38 a.m.