Filter.Gene: Filter.Gene

In steveyu323/SEURATEXT:

Description

keep only the cells barcode that have expression of gene higher than the threshold for now use seurat.ob->assays$RNA@data field, but may change the assay type

Usage

Filter.Gene(seurat.ob, gene, threshold = 0, reverse = F)

Arguments

seurat.ob	a seurat object type that have a count a count table inside with proper column name as cells and rowname as the gene
gene	the gene gonna impose the threshold filter on
threshold	the count number (exclusively greater) to define the presence of a certain gene in the cell. Default to 0
reverse	whether we would select the cells absent with the gene count smaller or equal to the threshold

Value

return the remained cell's barcode

steveyu323/SEURATEXT documentation built on Nov. 5, 2019, 9:38 a.m.