Files in strayMat/lineageDE
Differentially expressed genes in cell lineages
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/AllHelperFunctions.R
R/app.R
R/dtw_methods.R
R/likelihood_methods.R
R/rankings_comparison.R
R/regression_plots.R
R/warpDE_rank.R
README.md
data/OE_counts.RData
data/warpDEDataSet_example.RData
man/counts.Rd
man/dtw_align.Rd
man/dtw_rank.Rd
man/elbow_curve.Rd
man/g.rank.Rd
man/kendall.Rd
man/kendall.heatmap.Rd
man/likelihood_criteria.Rd
man/likelihood_rank.Rd
man/newrankingDE.Rd
man/newwarpDEDataSet.Rd
man/params.Rd
man/plot_genes.Rd
man/plot_rankings.Rd
man/quantiles_shared.Rd
man/ranking.df.Rd
man/rankingDE-class.Rd
man/rankings_compare.Rd
man/reg_gam.Rd
man/t.Rd
man/timeDE.Rd
man/w.Rd
man/warpDEDataSet-class.Rd
man/warpDEDataSet.Rd
man/warpDE_app.Rd
man/warpDE_rank.Rd
todo.md
vignettes/images/fig_lignees_study.png
vignettes/images/slingshot3d.png
vignettes/references.bib
vignettes/warpDE workflow.html
vignettes/warpDE.Rmd
warpDE.Rproj
