Description Usage Arguments Value
Compute a ranking of a list of genes based on the dynamic time warping distance between two lineages.
1 2 |
data |
a |
reg.f |
a function to perform regression, either "ns" for natural splines, "loess" or "splines" (default is "loess"). |
span |
numeric, a smoothing parameter for the regression function (default is 0.75, see |
s.df |
numeric, a smoothing parameter for the nsplines regregression (default is 4, see |
window.size |
integer, the size of the warping window (default is 50), see details. |
equal.size |
integer, if we want to specify the same number of points for each lineage to compute the dtw distance with (default is NULL, we use all points available in each lineage). |
gene |
character, a gene of interest. |
norm |
character,("L2" or "L1") the norm to be used for the dtw distance (default is "L2") |
returns a rankingDE
object.
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