Man pages for strayMat/lineageDE
Differentially expressed genes in cell lineages
| counts | Returns the counts matrix of the dataset |
| dtw_align | Align with dtw two lineages |
| dtw_rank | ranking genes with dtw |
| elbow_curve | Elbow curve for a ranking |
| g.rank | Returns the rank and distance of some genes |
| kendall | Compute kendall's tau between two rankings |
| kendall.heatmap | Heatmap visualization of multiple kendall comparisons |
| likelihood_criteria | Compute pvalues and aic difference criteria |
| likelihood_rank | Likelihood ranks |
| newrankingDE | Initialize an object of class 'rankingDE' |
| newwarpDEDataSet | Initialize an object of class 'warpDEDataSet' |
| params | Returns the parameters |
| plot_genes | Plot several genes expression patterns |
| plot_rankings | Compare two rankings by scatter plotting them |
| quantiles_shared | Compare two rankings by counting the shared elements along... |
| rankingDE-class | Class 'rankingDE' |
| ranking.df | Returns the ranking |
| rankings_compare | Compare two rankings with different means |
| reg_gam | Plot one gene raw data and its regressions |
| t | Returns the pseudotimes |
| timeDE | Differential Expression analysis according with time |
| w | Returns the pseudotimes |
| warpDE_app | Interactive plot for a ranking |
| warpDEDataSet | warpDEDataSet constructor |
| warpDEDataSet-class | Class 'warpDEDataSet' |
| warpDE_rank | Wrapper function for all ranking methods |
