Man pages for suke18/FEAST
FEAture SelcTion (FEAST) for Single-cell clustering
| align_CellType | Align the cell types from the prediction with the truth. |
| cal_3_metrics | Calculate 3 metrics and these methods are exported in C... |
| cal_F2 | Calculate the gene-level F score and corresponding... |
| cal_Fisher2 | Calculate the gene-level fisher score. |
| cal_metrics | Calculate 3 metrics and these methods are exported in C... |
| cal_MSE | Standard way to preprocess the count matrix. It is the QC... |
| Consensus | Consensus Clustering |
| eval_Cluster | Calculate the a series of the evaluation statistics. |
| FEAST | FEAST main function |
| FEAST_fast | FEAST main function (fast version) |
| log_TPM_SC3 | Standard way to preprocess the gene expression data in SC3... |
| Norm_Y | Normalize the count expression matrix by the size factor and... |
| process_Y | Standard way to preprocess the count matrix. It is the QC... |
| Purity | Calculate the purity between two vectors. |
| SC3_Clust | SC3 Clustering |
| Select_Model_short_SC3 | Using clustering results based on feature selection to... |
| Select_Model_short_TSCAN | Using clustering results (from TSCAN) based on feature... |
| setUp_BPPARAM | set up for the parallel computing for biocParallel. |
| Seurat_Clust | Seurat Clustering |
| trueclass | An example single cell dataset for the cell label information... |
| TSCAN_Clust | TSCAN Clustering |
| vector2matrix | function for convert a vector to a binary matrix |
| Visual_Rslt | Using clustering results based on feature selection to... |
| Y | An example single cell count expression matrix (Yan) |
