TSCAN_Clust: TSCAN Clustering

In suke18/FEAST: FEAture SelcTion (FEAST) for Single-cell clustering

Description

TSCAN Clustering

Usage

TSCAN_Clust(Y, k, minexpr_percent = 0.5, cvcutoff = 1, input_markers = NULL)

Arguments

Y	A expression matrix. It is recommended to use the raw count matrix.
k	The number of clusters. If it is not provided, k is estimated by the default method in SC3.
minexpr_percent	minimum expression threshold (default = 0.5).
cvcutoff	the cv cutoff to filter the genes (default = 1).
input_markers	A character vector including the featured genes. If they are not presented, SC3 will take care of this.

Value

the clustering labels and the featured genes.

Examples

 data(Yan)
 k = length(unique(trueclass))
 # TSCAN_res = TSCAN_Clust(Y, k=k)

suke18/FEAST documentation built on Sept. 14, 2021, 12:22 a.m.