process_Y: Standard way to preprocess the count matrix. It is the QC...

Description Usage Arguments Value Examples

View source: R/Utility.R

Description

Standard way to preprocess the count matrix. It is the QC step for the genes.

Usage

1
process_Y(Y, thre = 2)

Arguments

Y

A gene expression data (Raw count matrix)

thre

The threshold of minimum number of cells expressing a certain gene (default =2)

Value

A processed gene expression matrix. It is not log transformed

Examples

1
2
data(Yan)
YY = process_Y(Y, thre=2)

suke18/FEAST documentation built on Sept. 14, 2021, 12:22 a.m.