Man pages for surh/wheelP
Designing synthetic bacterial communities for predictable plant phenotypes
| add_condition | add condition |
| All.filtered | Bacterial growth curves in 4 different media |
| all_identical | Make sure all elements in list are identical |
| block_effects | Estimate block main effects |
| combine_datasets | Combine datasets |
| dist2df | Distance to data.frame |
| extract_taxonomy | Extract taxonomy info for one taxon |
| homogenize_taxa | homogenize taxa in abundance matrix |
| independent_lm_tests | Test all combinations of levels |
| merge_phen_and_abun | Merge phenotype data with relative abundances of blocks |
| metacoder_plot_go | Plot GO from edgeR |
| metadata_from_rowname | Extract metadata from rownames |
| mgsub | mgsub |
| obtain_block_abundances | Obtain block abundances |
| parse_tax_and_plot | Metacoder plot |
| perm_binaryP_enrich | Permutation enrichment test of phosphate modulators |
| plot_binary | Plot results from binary association |
| plot_combined_effects | Plot heatmap of all effects |
| plot_cross_mapping | Plot mapping id |
| plotgg_heatmap_syncom_effects | Plot syncom effects |
| plot_res | Plot binary association results |
| plot_set | Plot the expression of a set of genes |
| predict_from_main | Predict syncom from main effects |
| read_mapsplit_dir | Read count tables from mapsplit dirs |
| stat_smooth_func | Stat_smooth for coef of determination |
| strain_rsqrd | Calculate R-squared |
| term_class | From metacoder |
| test_all_strains | Test all strains for change in phosphate accumulation |
| test_auc | Test AUC |
| test_single_block_phenptype | Test the effect of single block on phenotype |
| test_single_community_phenotype | Test the effect of all single communities |
