perm_binaryP_enrich: Permutation enrichment test of phosphate modulators
In surh/wheelP: Designing synthetic bacterial communities for predictable plant phenotypes
Description
Usage
Arguments
Value
Author(s)
See Also
View source: R/perm_binaryP_enrich.r
Description
Tests whether the number of strains that modulate
plant shoot phosphate accumulation is signigicantly
enriched for positive or negative modulators.
Usage
1
2
perm_binaryP_enrich(test, N = 999, qval.thres = 0.1, max.val = Inf,
min.val = -Inf)
Arguments
test
result from test_all_strains
N
number of permutations
qval.thres
q-value threshold
max.val
Maximum value for log fold chance
min.val
maximum value for log fold change
Value
A vector of p-values
Author(s)
Sur Herrera Paredes
See Also
surh/wheelP documentation built on May 7, 2019, 10:11 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also
View source: R/perm_binaryP_enrich.r
Description
Tests whether the number of strains that modulate plant shoot phosphate accumulation is signigicantly enriched for positive or negative modulators.
Usage
1 2 | perm_binaryP_enrich(test, N = 999, qval.thres = 0.1, max.val = Inf,
min.val = -Inf)
|
Arguments
test |
result from test_all_strains |
N |
number of permutations |
qval.thres |
q-value threshold |
max.val |
Maximum value for log fold chance |
min.val |
maximum value for log fold change |
Value
A vector of p-values
Author(s)
Sur Herrera Paredes
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.