Files in surh/wheelP
Designing synthetic bacterial communities for predictable plant phenotypes
.Rbuildignore
.gitattributes
.gitignore
DATASETS.md
DESCRIPTION
LICENSE
NAMESPACE
R/block_effects.r
R/combine_datasets.r
R/data.R
R/dist2df.r
R/independent_lm_tests.r
R/internals.r
R/merge_phen_and_abun.r
R/metacoder_plot_go.r
R/obtain_block_abundances.r
R/parse_tax_and_plot.r
R/perm_binaryP_enrich.r
R/plot_binary.r
R/plot_combined_effects.r
R/plot_cross_mapping.r
R/plot_res.r
R/plot_set.r
R/plotgg_heatmap_syncom_efffects.r
R/predict_from_main.r
R/read_mapsplit_dirs.r
R/stat_smooth_func.r
R/strain_rsqrd.r
R/term_class.r
R/test_all_strains.r
R/test_auc.R
R/test_single_block_phenotype.r
R/test_single_community_phenotype.r
README.md
data/All.filtered.rda
data/Elongation.rda
data/Features.rda
data/Map.colonization.rda
data/Pi.rda
data/Strain.auc.rda
data/Tax.colonization.rda
data/binP.all.rda
data/binP.rda
data/cross.validation.error.rda
data/dge.wheel.rda
data/gc.tree.rda
data/group.colonization.rda
data/m1.wheel.rda
data/mds.colonization.rda
data/nn.sensitivity.rda
data/phen.additivity.rda
data/phen.presence.abundance.rda
data/pi.phi.cfu.rda
data/pre.treatments.rda
data/prediction.error.rda
data/signal.noise.ratio.rda
data/validation.predicted.observed.rda
data/wheelP.full.rda
data/wheelP.mapsplit.rda
data/wheelP.rna.rda
exec/percent_map.pl
inst/scripts/binP_1.allstrain_analysis.r
inst/scripts/binP_2.phosphate_binary.r
inst/scripts/binP_3.phylosig.r
inst/scripts/binP_4.syncom_selection.r
inst/scripts/colonization_1.homogenize_demultiplex_files.r
inst/scripts/colonization_2.create_datasets.r
inst/scripts/colonization_2.mapsplit_create_datasets.r
inst/scripts/colonization_3.phylograms.r
inst/scripts/colonization_3.qc_split_datasets.r
inst/scripts/colonization_4.validation_phylograms.r
inst/scripts/colonization_5.ordination.r
inst/scripts/gc_1.auc_clustering.r
inst/scripts/gc_2.check_tested.r
inst/scripts/gc_3.growth_curves_phylogenetic_signal.r
inst/scripts/gc_4.create_supp_table.r
inst/scripts/rna_1.create_dataset.r
inst/scripts/rna_2.cores_previous.r
inst/scripts/rna_3.fit_edgeR.r
inst/scripts/rna_4.1.contrast_tests.r
inst/scripts/rna_4.contrast_tests.r
inst/scripts/rna_5.clustering_analysis.r
inst/scripts/rna_6.plot_contrast_results.r
inst/scripts/rna_7.plot_effects.r
inst/scripts/syncom_1.elongation.r
inst/scripts/syncom_2.pi.r
inst/scripts/syncom_3.area.r
inst/scripts/syncom_4.totalroot.r
inst/scripts/syncom_5.heatmap_effects.r
inst/scripts/syncom_6.abundance_vs_presence.r
man/All.filtered.Rd
man/add_condition.Rd
man/all_identical.Rd
man/block_effects.Rd
man/combine_datasets.Rd
man/dist2df.Rd
man/extract_taxonomy.Rd
man/homogenize_taxa.Rd
man/independent_lm_tests.Rd
man/merge_phen_and_abun.Rd
man/metacoder_plot_go.Rd
man/metadata_from_rowname.Rd
man/mgsub.Rd
man/obtain_block_abundances.Rd
man/parse_tax_and_plot.Rd
man/perm_binaryP_enrich.Rd
man/plot_binary.Rd
man/plot_combined_effects.Rd
man/plot_cross_mapping.Rd
man/plot_res.Rd
man/plot_set.Rd
man/plotgg_heatmap_syncom_effects.Rd
man/predict_from_main.Rd
man/read_mapsplit_dir.Rd
man/stat_smooth_func.Rd
man/strain_rsqrd.Rd
man/term_class.Rd
man/test_all_strains.Rd
man/test_auc.Rd
man/test_single_block_phenptype.Rd
man/test_single_community_phenotype.Rd
