All.filtered: Bacterial growth curves in 4 different media

In surh/wheelP: Designing synthetic bacterial communities for predictable plant phenotypes

Description

A data.frame containing the 72-hour long of 441 strains grown in 4 conditions. Growth curves have been filtered to remove strains that didn't grow by clustering and removing those strains that looked more similar to sample blanks

Usage

All.filtered

Format

A data.frame with the following columns

Row

Row letter in the 96-well plate wee bacteria was grown

Column

Column from the 96-well plate were bacteria was grown

OD600

Bacterial abundance measurment in optical density at 600nm

Rep

Replicate number

hrs

Time-point of measurment in hours

Strain

Strain ID

Condition

Media used to grow the bacteria. minusP is Johnson media with 0 phosphate added, plusP is Johnson media with 1mM phosphate added. For minus2plusP, Arabidopsis seeds were germinated in Johnson media with zero phosphate, and then transferred for 24 hours into Johnson media with 1mM phosphate. After 24h the media was filter-sterilized and bacteria were grown on it. For plus2minusP Arabidopsis seeds were germinated in Johnson media with 1mM phosphate, and then transferred for 24 hours into Johnson media with no phosphate. After 24h the media was filter-sterilized

Source

Dangl Lab

surh/wheelP documentation built on May 7, 2019, 10:11 a.m.