| .ShortReadQ.identifySTRRegions |
Source code
|
| .aggregateQuality |
Source code
|
| .append_string |
Source code
|
| .baseErrorProbabilityConditinal |
Source code
|
| .baseErrorProbabilityMarginal |
Source code
|
| .character.identifySTRRegions |
Source code
|
| .combineMarkerIdentifiedReadsLists |
Source code
|
| .createRanking |
Source code
|
| .cyclicRotation |
Source code
|
| .extractAndTrimMarkerIdentifiedReads.mclapply |
Source code
|
| .extractAndTrimMarkerIdentifiedReadsReverseComplement |
Source code
|
| .extractedReadsList.stringCoverage |
Source code
|
| .findNeighbourStrings |
Source code
|
| .findNeighbours |
Source code
|
| .flankingAdditionalInformation |
Source code
|
| .geometricMean |
Source code
|
| .getCols |
Source code
|
| .getIndel |
Source code
|
| .getSingleIndel |
Source code
|
| .identifyFlankingRegions |
Source code
|
| .lapplymatchPatternBoth |
Source code
|
| .loadRData |
Source code
|
| .mclapplymatchPattern |
Source code
|
| .mmatchPattern |
Source code
|
| .noiseGenotypeIdentified.stringCoverageList.merge |
Source code
|
| .sampleQualityCleaning |
Source code
|
| .stringCoverageList.NoiseGenotype |
Source code
|
| .to.na |
Source code
|
| BLMM |
Man page
Source code
|
| STRMPSWorkflow |
Man page
Source code
|
| STRMPSWorkflowBatch |
Man page
Source code
|
| STRMPSWorkflowCollectStutters |
Man page
Source code
|
| extractedReadsList-class |
Man page
|
| extractedReadsListCombined-class |
Man page
|
| extractedReadsListNonCombined-class |
Man page
|
| extractedReadsListReverseComplement-class |
Man page
|
| findNeighbours |
Man page
|
| findNeighbours,stringCoverageGenotypeList-method |
Man page
|
| findStutter |
Man page
|
| findStutter,stringCoverageGenotypeList-method |
Man page
|
| flankingRegions |
Man page
|
| genotypeIdentifiedList-class |
Man page
|
| genotypeList |
Man page
|
| getGenotype |
Man page
|
| getGenotype,stringCoverageList-method |
Man page
|
| identifiedSTRs |
Man page
|
| identifyNoise |
Man page
|
| identifyNoise,stringCoverageList-method |
Man page
|
| identifySTRRegions |
Man page
|
| identifySTRRegions,ShortReadQ-method |
Man page
|
| identifySTRRegions,character-method |
Man page
|
| identifySTRRegions.control |
Man page
Source code
|
| mergeGenotypeStringCoverage |
Man page
|
| mergeGenotypeStringCoverage,genotypeIdentifiedList-method |
Man page
|
| mergeNoiseStringCoverage |
Man page
|
| mergeNoiseStringCoverage,noiseIdentifiedList-method |
Man page
|
| neighbourList-class |
Man page
|
| noiseIdentifiedList-class |
Man page
|
| noiseList |
Man page
|
| phredQualityProbability |
Man page
Source code
|
| phredQualityScore |
Man page
Source code
|
| solexaQualityProbability |
Man page
Source code
|
| solexaQualityScore |
Man page
Source code
|
| stringCoverage |
Man page
|
| stringCoverage,extractedReadsList-method |
Man page
|
| stringCoverage,extractedReadsListCombined-method |
Man page
|
| stringCoverage,extractedReadsListNonCombined-method |
Man page
|
| stringCoverage,extractedReadsListReverseComplement-method |
Man page
|
| stringCoverage.control |
Man page
Source code
|
| stringCoverageGenotypeList |
Man page
|
| stringCoverageGenotypeList-class |
Man page
|
| stringCoverageList |
Man page
|
| stringCoverageList-class |
Man page
|
| stringCoverageNoiseList-class |
Man page
|
| workflow.control |
Man page
Source code
|
