Files in svilsen/STRMPS
Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/STR_Region_Identification.R
R/all_in_one_workflow_fun.R
R/allele_genotype_functions.R
R/auxiliary_functions.R
R/quality_functions.R
R/stutter_functions.R
STRMPS.Rproj
data/flankingRegions.rda
data/genotypeList.rda
data/identifiedSTRs.rda
data/noiseList.rda
data/stringCoverageGenotypeList.rda
data/stringCoverageList.rda
inst/examples/blmm.R
inst/examples/getGenotype.R
inst/examples/getNoise.R
inst/examples/identify.R
inst/examples/mergeLists.R
inst/examples/probabilityOfError.R
inst/examples/qualityScores.R
inst/examples/stringCoverageAggregated.R
inst/examples/stutter.R
inst/examples/workFlow.R
inst/extdata/flankingRegionsForenSeqSTRsShifted.RData
inst/extdata/sampleSequences.fastq
man/BLMM.Rd
man/STRMPSWorkflow.Rd
man/STRMPSWorkflowBatch.Rd
man/STRMPSWorkflowCollectStutters.Rd
man/extractedReadsList-class.Rd
man/extractedReadsListCombined-class.Rd
man/extractedReadsListNonCombined-class.Rd
man/extractedReadsListReverseComplement-class.Rd
man/findNeighbours-stringCoverageGenotypeList-method.Rd
man/findNeighbours.Rd
man/findStutter-stringCoverageGenotypeList-method.Rd
man/findStutter.Rd
man/flankingRegions.Rd
man/genotypeIdentifiedList-class.Rd
man/genotypeList.Rd
man/getGenotype-stringCoverageList-method.Rd
man/getGenotype.Rd
man/identifiedSTRs.Rd
man/identifyNoise-stringCoverageList-method.Rd
man/identifyNoise.Rd
man/identifySTRRegions-ShortReadQ-method.Rd
man/identifySTRRegions-character-method.Rd
man/identifySTRRegions.Rd
man/identifySTRRegions.control.Rd
man/mergeGenotypeStringCoverage-genotypeIdentifiedList-method.Rd
man/mergeGenotypeStringCoverage.Rd
man/mergeNoiseStringCoverage-noiseIdentifiedList-method.Rd
man/mergeNoiseStringCoverage.Rd
man/neighbourList-class.Rd
man/noiseIdentifiedList-class.Rd
man/noiseList.Rd
man/probabilityOfError.Rd
man/qualityScore.Rd
man/stringCoverage-extractedReadsList-method.Rd
man/stringCoverage-extractedReadsListCombined-method.Rd
man/stringCoverage-extractedReadsListNonCombined-method.Rd
man/stringCoverage-extractedReadsListReverseComplement-method.Rd
man/stringCoverage.Rd
man/stringCoverage.control.Rd
man/stringCoverageGenotypeList-class.Rd
man/stringCoverageGenotypeList.Rd
man/stringCoverageList-class.Rd
man/stringCoverageList.Rd
man/stringCoverageNoiseList-class.Rd
man/workflow.control.Rd
