findNeighbours: Find neighbours

In svilsen/STRMPS: Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data

Find neighbours

Description

Generic function for finding neighbouring strings, given identified alleles.

Usage

findNeighbours(
  stringCoverageGenotypeListObject,
  searchDirection,
  trace = FALSE
)

Arguments

stringCoverageGenotypeListObject	A stringCoverageGenotypeList-class object.
searchDirection	The direction to search for neighbouring strings. Default is -1, indicating a search for '-1' stutters.
trace	Should a trace be shown?

Value

A 'neighbourList' with the neighbouring strings, in the specified direction, for the identified allele regions.

svilsen/STRMPS documentation built on Feb. 22, 2025, 4:51 p.m.