identifyNoise: Idenfities the noise.

In svilsen/STRMPS: Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data

Idenfities the noise.

Description

identifyNoise takes an stringCoverageList-object and identifies the noise based on a signal threshold for every marker in the provided list.

Usage

identifyNoise(
  stringCoverageListObject,
  colBelief = "Coverage",
  thresholdSignal = 0.01
)

Arguments

stringCoverageListObject	an stringCoverageList-object, created using the stringCoverage-function.
colBelief	the name of the coloumn used for identification.
thresholdSignal	threshold applied to the signal (generally the coverage) of every string.

Value

Returns a list, with an element for every marker in stringCoverageList-object, each element contains the genotype for a given marker.

Examples

# Strings aggregated by 'stringCoverage()'
data("stringCoverageList")

identifyNoise(stringCoverageList, thresholdSignal = 0.03)

svilsen/STRMPS documentation built on Feb. 22, 2025, 4:51 p.m.