mergeNoiseStringCoverage: Merge noiseIdentifiedList and stringCoverageList.

Description Usage Arguments Value Examples

Description

mergeNoiseStringCoverage merges noiseIdentifiedList-objects and stringCoverageList-objects.

Usage

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mergeNoiseStringCoverage(stringCoverageListObject,
  noiseGenotypeIdentifiedListObject)

Arguments

stringCoverageListObject

a stringCoverageList-object, created using the stringCoverage-function.

noiseGenotypeIdentifiedListObject

a noiseGenotypeIdentifiedList-object, created using the identifyNoise-function.

Value

Returns a list, with an element for every marker in extractedReadsList-object, each element contains the string coverage of all unique strings of a given marker.

Examples

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# Strings aggregated by 'stringCoverage()'
data("stringCoverageList")
# Genotypes identified by 'getGenotype()'
data("genotypeList")
# Noise identified by 'identifyNoise()'
data("noiseList")

mergeGenotypeStringCoverage(stringCoverageList, genotypeList)
mergeNoiseStringCoverage(stringCoverageList, noiseList)

svilsen/STRMPS documentation built on May 31, 2019, 7:55 a.m.