inst/examples/blmm.R
In svilsen/STRMPS: Analysis of Short Tandem Repeat (STR) Massively Parallel Sequencing (MPS) Data
# Creating compound string 's'
stretch1 <- paste0(rep("AATG", 10), collapse = "")
stretch2 <- paste0(rep("ATCG", 4), collapse = "")
s <- paste0(stretch1, stretch2)
# Return BLMM only
BLMM(s, motifLength = 4, returnType = "numeric")
# Return BLMM and motif of stretch
BLMM(s, motifLength = 4, returnType = "string")
# Return all blocks of 's'
BLMM(s, motifLength = 4, returnType = "fulllist")
svilsen/STRMPS documentation built on April 13, 2025, 8:47 a.m.
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# Creating compound string 's'
stretch1 <- paste0(rep("AATG", 10), collapse = "")
stretch2 <- paste0(rep("ATCG", 4), collapse = "")
s <- paste0(stretch1, stretch2)
# Return BLMM only
BLMM(s, motifLength = 4, returnType = "numeric")
# Return BLMM and motif of stretch
BLMM(s, motifLength = 4, returnType = "string")
# Return all blocks of 's'
BLMM(s, motifLength = 4, returnType = "fulllist")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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