Files in syounkin/RVsharing
Probability of Sharing Rare Variants among Relatives

.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R R/AllGenerics.R R/PFU.R R/RVgene.R R/RVgene_allshare.R R/RVsharing.fn.R R/approx2_functions.R R/extract_carriers.R R/functions.R R/methods-RVsharingProb.R R/methods-pedigree.R R/methods-trio.R R/ped2trio.R R/pvalue_functions.R R/zzz.R
data/ex.ped.mat.RData
data/ped.list.RData
inst/extdata/candidate.genes.txt
inst/extdata/filipino.fams.txt
inst/extdata/foobar
inst/extdata/germ_pitts_tw_iowa_syr_pedigree_jbh.csv
inst/extdata/german.fams.txt
inst/extdata/indian.fams.txt
inst/extdata/oc_cleaned05_related.kin
inst/extdata/syrian.fams.txt
inst/misc/Figure1.pdf inst/misc/Figure2.pdf inst/misc/Figure3.pdf inst/misc/FigureS2.pdf
inst/misc/Outline_WESpaper052013_clean.doc
inst/misc/Outline_WESpaper052013_clean.odt
inst/misc/RVsharing_R_package.docx
inst/misc/RVsharing_R_package_v2.docx
inst/misc/approx2_functions.r inst/misc/approx3secondcousins.r inst/misc/compute_kinship_prop_coef.R
inst/misc/data/candidate.genes.txt
inst/misc/data/filipino.fams.txt
inst/misc/data/germ_pitts_tw_iowa_syr_pedigree_jbh.csv
inst/misc/data/german.fams.txt
inst/misc/data/indian.fams.txt
inst/misc/data/oc_cleaned05_related.kin
inst/misc/data/syrian.fams.txt
inst/misc/fam28005.R
inst/misc/ped.list.Rdata
inst/misc/rare_variant_sharing_approx2_v2.r inst/misc/rare_variant_sharing_v3.r inst/misc/rare_variant_sharing_weighted_v2.r
inst/misc/rarebirds.rar
inst/misc/rarebirds_v4.rnw
inst/misc/rcode/PFU.r inst/misc/rcode/compute_kinship_prop_coef.R inst/misc/rcode/estimate_kinship_founders.r inst/misc/rcode/get.LODallshare.r inst/misc/rcode/ped2trio.r inst/misc/rcode/rare_variant_sharing_approx2_v2.r inst/misc/rcode/rare_variant_sharing_copies.r inst/misc/rcode/rare_variant_sharing_weighted_v2.r inst/misc/rcode/trio_recursion.R inst/misc/sharingprob_v3.pdf inst/misc/sharingprob_v4.pdf inst/misc/sharingprob_v6.pdf inst/misc/sharingprob_v7.pdf inst/misc/sharingprob_v8_with_figures.pdf inst/misc/test_approx3secondcousins.r
inst/rarebirds_v4.Rnw
man/GeneDrop.Rd man/GeneDropSim.allsubsets.fn.Rd man/GeneDropSim.fn.Rd man/GeneDropSimExcessSharing.fn.Rd man/RVgene.Rd man/RVgene_allshare.Rd man/RVsharing.Rd man/RVsharingProb.rd man/Trio.Rd man/compute.kinship.prop.coef.Rd man/ex.ped.mat.Rd man/get.psubset.Rd man/ped.list.Rd man/ped2trio.Rd vignettes/Bureau.pdf
vignettes/Complex.asciidoc
vignettes/Complex.asciidoc.txt
vignettes/Complex.html
vignettes/GeneDropping.asciidoc
vignettes/GeneDropping.asciidoc.txt
vignettes/GeneDropping.html
vignettes/Makefile
vignettes/RVsharing-vignette.pdf
vignettes/RVsharing.Rnw
vignettes/RVsharing.Rnw.defunct
vignettes/RVsharing.asciidoc
vignettes/RVsharing.asciidoc.txt
vignettes/RVsharing.html
vignettes/RVsharing.pdf vignettes/asciidoc.R vignettes/figures/RVsharing-plotped.pdf vignettes/figures/RVsharing-plotped2.pdf
vignettes/figures/fig-ped.jpg
vignettes/figures/fig-plotped.jpg
vignettes/figures/fig-plotped2.jpg
vignettes/figures/fig-plotped3.jpg
vignettes/figures/fig-plotped4.jpg
vignettes/figures/fig-plotped5.jpg
vignettes/figures/fig-secondcousins.jpg
vignettes/figures/fig-secondcousinsplot.jpg
vignettes/figures/fig-testped.jpg
vignettes/figures/fig-testpedfirst.jpg
vignettes/figures/fig-testpedsecond.jpg
vignettes/ped2trio.asciidoc
vignettes/ped2trio.asciidoc.R
vignettes/ped2trio.asciidoc.txt
vignettes/ped2trio.html
vignettes/rarebirds_v4.Rnw.defunct
vignettes/sharingprob_v4.pdf
vignettes/trio2ped.asciidoc
syounkin/RVsharing documentation built on May 31, 2019, 12:47 a.m.