ReportGeneration: Report generation

In sysbioTurin/connector: Fitting and clustering of longitudinal data

Report generation

Description

Report generation

Usage

ReportGeneration(
  data,
  stability.list,
  G,
  feature = "ID",
  namefile = "Report",
  path = NULL,
  truncTime = NULL,
  p = NULL,
  pRange = NULL
)

Arguments

data	CONNECTORList. (see DataImport)
stability.list	The list obtained from the ClusterAnalysis function. (see ClusterAnalysis)
G	Vector of integers representing the number of clusters.
feature	The column name reported in the AnnotationFile containing the feature to be investigated.
namefile	Report name.
path	The folder path where the report will be saved. If it is missing, the report is saved in the current working directory.
truncTime	A two dimension vector of integers corresponding to the time points where the curves will be truncated. If an integer number is passed, than it will be considered as the upper time point by default.
p	The dimension of the natural cubic spline basis. (see BasisDimension.Choice)
pRange	The vector of the dimension of the natural cubic spline basis, by which the cross-validated loglikelihood is calculated and plotted. It could be the path of the Rds file storing the output of the BasisDimension.Choice function. If NULL, the p selection step is omitted.

Author(s)

Cordero Francesca, Pernice Simone, Sirovich Roberta

See Also

GrowthCurve, codeTimeGridDensity.

sysbioTurin/connector documentation built on April 9, 2024, 12:10 p.m.