TimeGridDensity: Time Grid Density

In sysbioTurin/connector: Fitting and clustering of longitudinal data

Time Grid Density

Description

Plots the grid of the time points at which the growth data are collected. Each point of the grid is colored with respect to its frequency in the input data.

Usage

TimeGridDensity(data, save = FALSE, path = NULL)

Arguments

data	CONNECTORList. (see DataImport)
save	If TRUE then the density time grid plot is saved into a pdf file.
path	The folder path where the plot will be saved. If it is missing, the plot is saved in the current working directory.

Value

Time Grid Density returns the time grid density plot as a ggplot object, in which a point $p_x,y$ is defined by a pair of coordinates $p_x,y=\left( x,y\right) \ $ and by a colour. $p_x,y$ is defined if only if exists at least one sample with two observations at time $x\ $ and $y$. The colour associates with it encodes the frequency of samples in which $p_x,y$ is present.

Author(s)

Cordero Francesca, Pernice Simone, Sirovich Roberta

Examples

GrowDataFile<-"data/745dataset.xls"
AnnotationFile <-"data/745info.txt"

CONNECTORList <- DataImport(GrowDataFile,AnnotationFile)
TimeGridDensity(CONNECTORList)

sysbioTurin/connector documentation built on April 9, 2024, 12:10 p.m.