Description Usage Arguments Details Value Author(s) References Examples
View source: R/assessCorrectBATCH.R
Assess if batch effect still exists after correctBATCH batch correction.
1 | assessCorrectBATCH(rerun2, qopt, nt, rerun22, theme)
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rerun2 |
Results of running findBATCH to assess batch effect. |
qopt |
Optimal number of PCs. |
nt |
Number of biological classes. |
rerun22 |
Results of running findBATCH to assess biological effect. |
theme |
ggplot theme |
Assess if batch effect still exists after correctBATCH batch correction.
Results in assessCorrectBATCH folder in the working directory.
Nyamundanda, G., Poudel, P., Patil, Y. and Sadanandam, A.
Nyamundanda, G., Poudel, P., Patil, Y. and Sadanandam, A., 2017. A novel and robust statistical method to diagnose and correct batch effects in genomic data.
1 2 3 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
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