pcaBeforeCorrection: PCA before correction.

Description Usage Arguments Details Value Author(s) References Examples

View source: R/pcaBeforeCorrection.R

Description

PCA before correction.

Usage

1
pcaBeforeCorrection(rs1, grps, cGsub, batchCL, Conf, type, Ys)

Arguments

rs1

Results of PCA.

grps

Number of batches.

cGsub

Colors

batchCL

A vector identifying batches.

Conf

A vector identifying biological classes.

type

Names biological classes.

Ys

Expression data.

Details

PCA before correction

Value

Results in the pcaBeforeCorrection folder in the working directory.

Author(s)

Gift Nyamundanda and Anguraj Sadanandam

References

Nyamundanda, G. and Sadanandam, A., 2016. A novel and robust statistical method to diagnose and correct batch effects in large-scale genomic data.

Examples

1
2
3
##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

syspremed/exploBATCH documentation built on April 4, 2018, 6:54 a.m.