correctComBat: Batch correction with ComBat

Description Usage Arguments Details Value Author(s) References Examples

View source: R/correctComBat.R

Description

Batch correction with ComBat

Usage

1
correctComBat(Ys, batchCL, grps, cGsub, Conf)

Arguments

Ys

Expression data

batchCL

A vector identifying batches.

grps

Number of batches

cGsub

Colors

Conf

A vector identifying biological classes.

Details

Batch correction with ComBat

Value

Results in correctComBat folder in the working directory.

Author(s)

Gift Nyamundanda and Anguraj Sadanandam

References

Nyamundanda, G. and Sadanandam, A., 2016. A novel and robust statistical method to diagnose and correct batch effects in large-scale genomic data.

Examples

1
2
3
##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

syspremed/exploBATCH documentation built on April 4, 2018, 6:54 a.m.