correctComBat: Batch correction with ComBat

In syspremed/exploBATCH: Explore batch effect (exploBATCH) is a package for discovering and correcting for batch effect using an approach in Nyamundanda et al (2017).

Description

Batch correction with ComBat

Usage

correctComBat(Ys, batchCL, grps, cGsub, Conf, theme, type)

Arguments

Ys	Expression data
batchCL	A vector identifying batches.
grps	Number of batches
cGsub	Colors
Conf	A vector identifying biological classes.
theme	ggplot theme
type	plot

Details

Batch correction with ComBat

Value

Results in correctComBat folder in the working directory.

Author(s)

Nyamundanda, G., Poudel, P., Patil, Y. and Sadanandam, A.

References

Nyamundanda, G., Poudel, P., Patil, Y. and Sadanandam, A., 2017. A novel and robust statistical method to diagnose and correct batch effects in genomic data.

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

syspremed/exploBATCH documentation built on May 23, 2019, 9:34 a.m.