API for t-arae/ngscmdr
| Global functions | |
|---|---|
| %>% | Man page |
| as_input_file | Man page Source code |
| calc_rpkm | Man page Source code |
| calc_rpkm_from_featurecounts | Man page Source code |
| calc_rpm | Man page Source code |
| calc_rpm_from_featurecounts | Man page Source code |
| calc_tpm | Man page Source code |
| calc_tpm_from_featurecounts | Man page Source code |
| cmd_get | Man page Source code |
| cmd_get.extract_file_from_tar | Source code |
| cmd_get.fastp_qf | Source code |
| cmd_get.merge_gz | Source code |
| cmd_get.star | Source code |
| cmd_set_extract_file_from_tar | Man page Source code |
| cmd_set_fastp_qf | Man page Source code |
| cmd_set_merge_gz | Man page Source code |
| cmd_set_star | Source code |
| fastqc_data | Man page Source code |
| fastqc_summary | Man page Source code |
| get_file_ext | Man page Source code |
| glue_bam2wig | Man page Source code |
| glue_bam_index | Man page Source code |
| glue_bam_sort | Man page Source code |
| glue_bamstat | Man page Source code |
| glue_bowtie2_bamsort | Man page Source code |
| glue_bowtie2_genome_generate | Man page Source code |
| glue_bowtie2_rm_contami | Man page Source code |
| glue_bowtie2_rm_contami_pe | Man page Source code |
| glue_bowtie_bamsort | Man page Source code |
| glue_bowtie_genome_generate | Man page Source code |
| glue_check_gz_size | Man page Source code |
| glue_cuffcompare | Man page Source code |
| glue_cuffdiff | Man page Source code |
| glue_cufflinks | Man page Source code |
| glue_cuffmerge | Man page Source code |
| glue_cuffnorm | Man page |
| glue_cuffquant | Man page Source code |
| glue_fastp_qf | Man page Source code |
| glue_fastp_qf_pe | Man page Source code |
| glue_fastq_qf | Man page Source code |
| glue_fastq_qf_cl | Man page Source code |
| glue_fastqc | Man page Source code |
| glue_fqgz2rfqxz | Man page Source code |
| glue_genomecov | Man page Source code |
| glue_gff2bed | Man page Source code |
| glue_hisat_genome_generate | Man page Source code |
| glue_multiqc | Source code |
| glue_pe_cutadapt | Man page Source code |
| glue_pe_featurecounts | Man page Source code |
| glue_pe_hisat_bamsort | Man page Source code |
| glue_pe_star_bamsort | Man page Source code |
| glue_rfqxz2fqgz | Man page Source code |
| glue_rseqc_clipping_profile | Source code |
| glue_rseqc_deletion_profile | Source code |
| glue_samtools_view | Source code |
| glue_se_cutadapt | Man page Source code |
| glue_se_featurecounts | Man page Source code |
| glue_se_hisat_bamsort | Man page Source code |
| glue_se_star_bamsort | Man page Source code |
| glue_sra2fastq | Source code |
| glue_star_genome_generate | Man page Source code |
| merge_featurecount_output | Man page Source code |
| new_cmdopt | Man page Source code |
| param_general | Man page Source code |
| param_genomeidx | Man page Source code |
| pipeline_cuffdiff | Man page |
| pipeline_cuffdiff_noRABT | Man page |
| print.cmdopt | Man page Source code |
| set_file_ext | Man page Source code |
| set_inf_class | Man page Source code |
