glue_se_star_bamsort: Map with STAR and output a sorted bam file

In t-arae/ngscmdr:

Description

Map with STAR and output a sorted bam file

Usage

glue_se_star_bamsort(head_label, in_dir = "./fastq",
  out_dir = "./mapped_by_star", idx_dir = "./idx_star",
  gff_path = "TAIR10_GFF3_genes_transposons.gff", core_num = 4)

Arguments

head_label	sample label
in_dir	A path of directory which contains input files
out_dir	A path of directory for saving output files
idx_dir	directory path for the indexing output
gff_path	.tar file path
core_num	number of cpu core

t-arae/ngscmdr documentation built on Sept. 23, 2019, 5:45 a.m.