glue_se_star_bamsort: Map with STAR and output a sorted bam file

Description Usage Arguments

View source: R/glue-star.R

Description

Map with STAR and output a sorted bam file

Usage

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glue_se_star_bamsort(head_label, in_dir = "./fastq",
  out_dir = "./mapped_by_star", idx_dir = "./idx_star",
  gff_path = "TAIR10_GFF3_genes_transposons.gff", core_num = 4)

Arguments

head_label

sample label

in_dir

A path of directory which contains input files

out_dir

A path of directory for saving output files

idx_dir

directory path for the indexing output

gff_path

.tar file path

core_num

number of cpu core


t-arae/ngscmdr documentation built on Sept. 23, 2019, 5:45 a.m.