Map paired-end reads with hisat and output a sorted bam file
1 2 3 | glue_pe_hisat_bamsort(head_label, core_num = 2, idx_name = "TAIR10",
idx_dir = "./idx_hisat", in_dir = "./fastq",
out_dir = "./mapped_by_hisat")
|
head_label |
sample label |
core_num |
number of cpu core |
idx_name |
index name |
idx_dir |
directory path for the indexing output |
in_dir |
A path of directory which contains input files |
out_dir |
A path of directory for saving output files |
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