glue_hisat_genome_generate: Generate genome index for HISAT2
In t-arae/ngscmdr:
Description
Generate genome index for HISAT2
Usage
1
2
glue_hisat_genome_generate(fasta_path = "./allChr.fas",
idx_name = "TAIR10", idx_dir = "./idx_hisat", core_num = 2)
Arguments
fasta_path
genome fasta file path for indexing
idx_name
index name
idx_dir
directory path for the indexing output
core_num
number of cpu core
t-arae/ngscmdr documentation built on Sept. 23, 2019, 5:45 a.m.
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Description
Generate genome index for HISAT2
Usage
1 2 | glue_hisat_genome_generate(fasta_path = "./allChr.fas",
idx_name = "TAIR10", idx_dir = "./idx_hisat", core_num = 2)
|
Arguments
fasta_path |
genome fasta file path for indexing |
idx_name |
index name |
idx_dir |
directory path for the indexing output |
core_num |
number of cpu core |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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