bed2granges | bed to GRanges |
DMREnhancer | Extraction of DMR associated enhancer |
DMRNbinomTest | negative binomial test |
DMRPromoter | Extraction of DMR associated promoter |
gencode_gr | Genecode GRanges object |
gff32granges | gff3 to GRanges |
gh_bed | GeneHancer bed-like format object |
granges2bed | GRanges to bed |
metaDissociate | extraction of metadata infomation |
metTFNet | Target network of methyl-regulationg TF |
metTFNet.multi | Target network of multiple methyl-regulationg TF |
MotPosiList | Motif position list at DMRs |
ngsplotr | reads enrichment plots |
OptRange | Number of significant targets |
position2bed3 | position to bed3 |
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