ngsplotr: reads enrichment plots

In takahirosuzuki0626/mTFTarget:

Description

This function draws a line plot foraverage enrichment of ngs reads and heatmaps for ngs reads enrichment (k-means and hierarchical clusterings).

Usage

ngsplotr(bam.files, peaks, bin.num = 100, sample_names,
  range = c(-5000, 5000), outname = "my_enrichment")

Arguments

bam.files	a vector of bam.file locations
peaks	a GRanges object for regions to be analyzed.
bin.num	number of bin for score matrix
sample_names	sample names of bam files
range	a raneg to be analyzed
outname	name for output file

Value

a scorMatrix object and export a line plot, heatmaps(k-mean and hierarchical clusterings) as a pdf)

takahirosuzuki0626/mTFTarget documentation built on Jan. 4, 2022, 9:44 a.m.