API for tallulandrews/M3D
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq

Global functions
BrenneckeGetVariableGenes Man page Source code
Consensus_FS Man page Source code
ConvertSetstoTable Source code
M3DropCleanData Man page Source code
M3DropDropoutModels Man page Source code
M3DropExpressionHeatmap Man page Source code
M3DropFeatureSelection Man page Source code
M3DropGetExtremes Man page Source code
M3DropGetHeatmapClusters Man page Man page Source code
M3DropGetHeatmapNames Man page Source code
M3DropGetMarkers Man page Source code
M3DropSimulationTrifecta Man page Source code
M3DropTestShift Man page Source code
M3DropThreeSetVenn Man page Source code
Make_Sim Source code
NBumiCheckFit Man page Source code
NBumiCheckFitFS Man page Source code
NBumiCompareModels Man page Source code
NBumiConvertToInteger Man page Source code
NBumiFeatureSelectionCombinedDrop Man page Source code
NBumiFeatureSelectionHighVar Man page Source code
NBumiFitBasicModel Man page Source code
NBumiFitDispVsMean Man page Source code
NBumiFitModel Man page Source code
NBumiImputeNorm Man page Source code
NBumiSimulationTrifecta Man page Source code
PlaceLabels Source code
PoissonUMIFeatureSelectionDropouts Man page Source code
bg__MakeSimDE Man page Source code
bg__MakeSimDVar Man page Source code
bg__MakeSimData Man page Source code
bg__MakeSimHVar Man page Source code
bg__add_model_to_plot Man page Source code
bg__calc_variables Man page Source code
bg__default_mean2disp Man page Source code
bg__dropout_plot_base Man page Source code
bg__expression_heatmap Man page Source code
bg__filter_cells Man page Source code
bg__fit_MM Man page Source code
bg__fit_ZIFA Man page Source code
bg__fit_gamma Man page Source code
bg__fit_logistic Man page Source code
bg__fit_size_to_var Man page Source code
bg__fitdispersion Man page Source code
bg__get_extreme_residuals Man page Source code
bg__get_mean2disp Man page Source code
bg__get_stats Man page Source code
bg__highlight_genes Man page Source code
bg__horizontal_residuals_MM_log10 Man page Source code
bg__m3dropTraditionalDE Man page Source code
bg__m3dropTraditionalDEShiftDisp Man page Source code
bg__nbumiGroupDE Man page Source code
bg__shift_size Man page Source code
bg__test_DE_K_equiv Man page Source code
bg__var_vs_drop Man page Source code
broken__m3dropCTraditionalDE Source code
broken__nbumiCGroupDE Source code
circle_intersection Source code
circle_line_intersection Source code
corFS Man page Source code
giniFS Man page Source code
hidden__Grun_fs Source code
hidden__UQ Source code
hidden__calc_DE_stats_fpr Source code
hidden__calc_DE_stats_simplified Source code
hidden__calc_DE_stats_simplified_singular Source code
hidden__cv2coeffs Source code
hidden__fit_MM_logistic Source code
hidden__fit_MM_lognormal Source code
hidden__ginifs_simple Source code
hidden__invert_MM Source code
hidden__normalize Source code
hidden__pca_fs Source code
hidden__test_DE_K_equiv_raw Source code
hidden__test_DE_P_equiv Source code
hidden__test_DE_S_equiv Source code
hidden_add_dropouts Source code
hidden_amplification1 Source code
hidden_calc_p Source code
hidden_calc_vals Source code
hidden_fast_AUC_m3drop Source code
hidden_getAUC Source code
hidden_get_K Source code
hidden_m3dropImputeZeros Source code
hidden_nbumiImputeZeros Source code
hidden_shift_size Source code
irlbaPcaFS Man page Source code
obsolete__calc_DE_stats Source code
obsolete__fit_size_to_drop Source code
obsolete__nbumiFeatureSelectionDropouts Man page Source code
obsolete__nbumiFeatureSelectionHighVarDist2Med Man page Source code
plot.venn.diagram Source code
venn.overlap Source code
tallulandrews/M3D documentation built on Nov. 28, 2017, 9:08 a.m.