gintervals.neighbors1: Finds neighbors between two sets of intervals (and does not...

In tanaylab/misha.ext: A home to functions that extend the misha package

Finds neighbors between two sets of intervals (and does not return conflicting column names)

Description

Finds neighbors between two sets of intervals (and does not return conflicting column names)

Usage

gintervals.neighbors1(
  intervals1 = NULL,
  intervals2 = NULL,
  maxneighbors = 1,
  mindist = -1e+09,
  maxdist = 1e+09,
  na.if.notfound = TRUE,
  fields = NULL
)

Arguments

intervals1, intervals2	intervals
maxneighbors	maximal number of neighbors
mindist, maxdist	distance range for 1D intervals
na.if.notfound	if 'TRUE' return 'NA' interval if no matching neighbors were found, otherwise omit the interval in the answer
fields	select only these fields from intervals2. Note that when there are conflicting names - the repaired name should be used, see tibble::repair_names.

Value

a data frame containing the pairs of intervals from 'intervals1', intervals from 'intervals2' (with a suffix of '1', i.e. chrom1, start1 and end1), and an additional column named 'dist' ('dist1' and 'dist2' for 2D intervals) representing the distance between the corresponding intervals.

See Also

gintervals.neighbors

tanaylab/misha.ext documentation built on Sept. 18, 2024, 2:53 a.m.