gintervals.remove_overlaps: Remove overlapping intervals by selecting one interval per...

In tanaylab/misha.ext: A home to functions that extend the misha package

Remove overlapping intervals by selecting one interval per overlap group

Description

Remove overlapping intervals by selecting one interval per overlap group

Usage

gintervals.remove_overlaps(intervals, select = c("first", "last", "random"))

Arguments

intervals	intervals set
select	how to select intervals from each group: "first", "last", or "random" (default: "first")

Value

The intervals set with overlapping intervals removed, keeping one interval per group based on the selection method

Examples

## Not run: 
# Create sample overlapping intervals
intervs <- data.frame(
    chrom = "chr1",
    start = c(11000, 100, 10000, 10500),
    end = c(12000, 200, 13000, 10600),
    data = c(10, 20, 30, 40)
)

# Remove overlaps keeping first interval in each group
non_overlapping <- gintervals.remove_overlaps(intervs)

# Remove overlaps keeping random interval from each group
non_overlapping <- gintervals.remove_overlaps(intervs, select = "random")

## End(Not run)

tanaylab/misha.ext documentation built on Jan. 2, 2025, 12:27 p.m.