gtrack.import_mappedseq_bam: Wrapper around gtrack.import_mappedseq for (multiple) bam...

In tanaylab/misha.ext: A home to functions that extend the misha package

Wrapper around gtrack.import_mappedseq for (multiple) bam files

Description

Wrapper around gtrack.import_mappedseq for (multiple) bam files

Usage

gtrack.import_mappedseq_bam(bam_files, min_mapq = NULL, ...)

Arguments

bam_files	vector of bam (or sam) files to import
min_mapq	skip alignments with MAPQ smaller than min_mapq
...	Arguments passed on to misha::gtrack.import_mappedseq track track name description a character string description file name of mapped sequences file pileup interval expansion binsize bin size of a dense track cols.order order of sequence, chromosome, coordinate and strand columns in mapped sequences file or NULL if SAM file is used remove.dups if 'TRUE' the duplicated coordinates are counted only once.

Value

None

See Also

gtrack.import_mappedseq

tanaylab/misha.ext documentation built on Oct. 1, 2024, 10:55 a.m.